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The MCAT Course Syllabus

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This syllabus will soon be populated with links to a large quantity of free learning materials, a matter of a few days. The present learning tasks do not reflect all the free stuff I have decided to make available, but changing anything to do with this course is a like turning a big ship. It is coming in. I promise you will not be waiting on the dock very long. Stay and read the syllabus, especially the learning goals and try to understand how the Main Cycle, Overview, and Interdisciplinary goals will be working together. I have live students hearing a session on the first module next Monday in Atlanta. Although we will be meeting every other week for ten months, there are students in my live course preparing for the August exam, so you can rest assured things will be ready for anybody starting their MCAT preparation here today.

For the learning tasks, you can see how my works listed on the home page are going to fit in here. I have not made everything you need. You still need a big MCAT book because I decided ten years ago not to create works someone else had already done well enough, so although I have a complete set of physical sciences problem sets, which I composed in 1993 and 1994, I released myself from the burden of writing 500 organic problems. I had other things to do. The Kaplan Book is good, but the ExamKrackers set is better, although it is three times more expensive. You are fine with pretty much any combination of MCAT books that is at least five inches tall on the desk. We will use them for topical problem drill and conceptual cycling and that is about it. The first four modules will soon have links within all the learning tasks to WikiPremed creative commons materials you will be able to download, actually Wednesday barring unforeseen developments.
Main Sequence     Overview Cycle     Interdisciplinary Discussions     Testing     Verbal Reasoning     Essay

Module 8 - Water, Solutions, and Acids & Bases

ALERT! - Get Ready for a Practice Test in Module 10

After the Overview Cycles of this module and the next, you will have reviewed the basic material of Physics, Chemistry, Organic Chemistry, and Biology from beginning to end at least a few times. Furthermore, in the Main Sequence, we will have studied a good portion of the Physics, General Chemistry, and Organic Chemistry in depth. Although we won't have begun Biology yet in the Main Sequence, you should at least have a good familiarity from your Overview Cycle work. You will have performed an intense program of reading and verbal reasoning exercises, and you will have written a good number of essays. In two modules time then, you will arrange to have your first serious practice test. In other words, it is time to begin holding yourself responsible for the knowledge from beginning to end.

See if you can't convince yourself that you are actually taking the MCAT after module 10. Work the next few weeks as if the test were just around the corner. Let yourself stress out now, so that you can get the knowledge into your head, and get the stress out of your system, with plenty of time left after this first practice test to fix your weaknesses and build superior mastery before the real exam.

Module 8 - Overview

Main Sequence - Water, Solutions, Acids & Bases, and Organic Acids and Bases

Overview Cycle - Take a tour of Biology as a whole. Review the structure of Biology and the main ideas throughout the discipline.

Interdisciplinary Discussions - Integrate fundamental physics and chemistry principles with the Solution and Acid/Base concepts. Preview these concepts within various biological contexts.

Testing - Take a comprehensive diagnostic test on Mechanics, Waves and Thermodynamics at the Testing Center

Essay and Verbal Reasoning - Learn to recognize the different types of verbal reasoning questions. Write another essay.

Module 8 - Main Sequence        { 12 - 15 hours }

In previous modules we have discussed how to interpret the the changes which may occur within a chemical system focusing on the kinetic energy of the particles and electrostatic potential energy at the atomic, molecular, and intermolecular levels. We have discussed how to describe change in the internal energy of a chemical system as a whole, and we connected internal energy change to thermodynamic work and heat flow. In the last module, we discussed the spontaneity of chemical change, seeking an improved understanding of the test of spontaneity, whether a change in a chemical system will produce an increase in entropy in the universe, in other words, whether free energy is being lost by the system either due to an increase in disorder in the system or to heat flow from the system to the surroundings. In our previous discussions of chemistry, we have been working to develop the intuitive feel at the heart of a rich conceptual understanding of chemistry.

At our current stage, in the current module, we will bring our intuition and conceptual understanding to bear on two important fields of chemistry, the first being Solution Chemistry and the second being Acids & Bases. Because the role of water is centrally important, not only for these two topics, but within chemistry and biology as a whole, we will also take time focus separately on the physical and chemical properties of water.










The only common substance found naturally in all three states of matter, the liquid form of water is the most abundant substance on the Earth's surface. The solid phase of water, ice, is actually less dense than the liquid phase. What are some of the other physical and chemical properties of water that make it so vital for life? The solvent properties of water are essential for life processes as we understand them. Aqueous solution or aqueous colloidal suspension is the real world context for most biochemical processes with the solubility properties of macromolecules in water being a primary driver of biochemical behavior. The ability of water to form strong hydrogen bonds is at the heart of its solvency. The surface tension, dielectric properties, and amphoteric nature of water are all important in life processes.



Water on the MCAT

Although you definitely may see some direct questions about water on the MCAT, beyond those, the aqueous solution context will be omnipresent on the exam. Simply put, aqueous solution is the most important field of play for phenomena both for general chemistry (solutions, acids & bases, and electrochemistry) and biology. Direct questions regarding the properties of water may involve its phase equilibria, for example. The H - O - H bond angle is another favorite, but beyond the direct questions, bear in mind that for many, many questions on the test, water will figure indirectly as the medium in which the phenomena in question are occuring. Just as the chemical behavior of water plays a crucial role in science, especially the science underlying medicine, understanding water is crucial for mastering the MCAT.



Learning Goals for the Properties of Water


Understand the basis of the geometry of a water molecule in VESPR.
Be prepared to explain the polarity of water molecules and hydrogen bonding as their mode of intermolecular force.
Be able to describe the dielectric properties of water.
Understand the physical properties of water including its phase equilibria. Be able to describe relationship between the density of water and the temperature. Be able to describe the triple point of water.
Know which categories of substances dissolve in water. Be able to predict the solubility of an organic substance in water from its structural formula. Understand the solubility properties of biological macromolecules.
Understand the solution process for an electrolyte in water. Be able to describe a hydration sphere.
Grasp the amphoteric nature of water.
Comprehend osmosis.

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Suggested Assignments


Spend a half-hour reading about water in your college chemistry textbook. Read the bold headings, formulas, and summaries. Look at the pictures.
Review the Properties of Water external resources within the Exploration Environment.
You are unlikely to find a set of MCAT style multiple-choice questions specifically decidated to water. At least you should think through some of the review questions on water in your college chemistry textbook.

Activate the syllabus for task and goal management      






A solution is a homogeneous mixture of two or more substances, distinguished from non-homogeneous mixtures such as colloids and suspensions. There may be solid, liquid, or gaseous solutions. For certain types of liquid solutions, it is useful to describe the solution as comprised of one or more solutes dissolved within a solvent. The solubility of a solute describes its ability to dissolve in a certain solvent. A variety of concentration expressions are useful within different contexts to describe the composition of a solution including mole fraction, percent by weight, molarity, and molality. The colligative properties refer to the changes that occur in the physical properties of a solvent when a solute is added to it such as boiling point elevation, freezing point depression, and vapor pressure lowering.

For certain types of aqueous solutions of sparingly soluble electrolytes, an equilibrium will be established at low concentration between the dissolved ions and undissolved solute or precipitate which can be quantatively described using the solubility product corresponding to particular ion pairs.


Solutions on the MCAT

If you do not know this material backwards and fowards, you will suffer on the MCAT. The topic of Solutions equals any other in importance for the MCAT. Nearly every exam will require you to apply this material multiple times. Practically guaranteed, you will see something about colligative properties and something from heterogeneous solution equilibria. Do not neglect this material. Solutions will be on the test in a major way.

Learning Goals for Solutions


Be able to clearly distinguish a solution from other types of mixtures such as colloids.
Comprehend solutions involving various phases of matter. Be able to name a few solid, liquid, and gaseous solutions.
Understand how to work with various concentration expressions including mole fraction, molality, molarity and normality.
Understand the basis of solubility in chemical thermodynamics. Be capable of predicting the solubility in water of an organic compound from its structural formula.
Understand why some electrolytes are less soluble than others. Remember the solubility rules for electrolytes.
Have a clear sense of the structure at the particle level of an aqueous solution of electrolytes.
Gain facility in employing the solubility product to solve problems such as the final concentration of a solution of weak electrolyte.
Be able to describe the common ion effect and become familiar with typical common ion effect problems.
Understand heterogeneous solution equilibria when it is coupled with acid-base equilibria.
Be prepared to solve problems involving colligative properties including boiling point elevation, freezing point depression, vapor pressure lowering, and osmotic pressure.
Understand the definition of a colloidal suspension. Be able to conceptualize the structure at the particle level of micellar suspensions involving soaps and detergents.
Familiarize yourself with the chemical separation technique known as solvent extraction.

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Suggested Assignments


Carefully study Solutions in your Main Sequence Book.
Take a review tour of the Solutions external resources in the Exploration Environment.
Read the bold headings, formulas, and captions of the basic Solutions chapter and Heterogeneous Solution Equilibria chapter of a good college chemistry textbook.
Perform a set of ten to twenty MCAT style multiple-choice questions in Solutions from your Main Sequence Book.

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The definition of an acid or a base depends on the system you are using. In the Arrhenius definition of acids and bases, an acid is a substance that releases hydrogen ions when dissolved in water, and a base is a substance that releases hydroxide ions. Although in chemistry today, the Brønsted-Lowry definition has largely superseded it, under the Arrhenius definition it is possible to predict the result of the neutralization of an acid with a base, which is a salt and water.

If a chemist doesn't specify which acid-base system they are using, it can be assumed they are working within the Brønsted-Lowry system. A Brønsted acid is any substance that can donate a hydrogen ion. A Brønsted base is defined as any substance that can accept a hydrogen ion. In other words, a Brønsted acid is a proton donor, and a Brønsted base is a proton receiver. The Brønsted-Lowry system describes the acid-base reaction as occuring within a system of conjugate acid-base pairs governed by an equilibrium. Acids increase the concentration of hydrogen ions, while bases decrease the concentration of hydrogen ions. The acidity or basicity of a solution can therefore can be measured by its hydrogen ion concentration (or pH, the negative logarithm of concentration).

The Lewis definition of acids (as electron pair receivers) and bases (as electron pair donors) is actually broader than either the Arrhenius or Brønsted-Lowry. The Lewis system provides a productive framework for viewing many chemical events from nucleophilic approach to the formation of coordination complexes, although the Brønsted-Lowry system is the traditional framework for discussion and problem solving involving acid-base equilibria.



Acids & Bases on the MCAT

As with Solutions, the previous chapter, every MCAT will have a number of questions deriving from the material in Acids & Bases. Although big, multi-variable quantitative acid-base equilibrium questions are a standard of Chem 101, you are not likely to run into such questions on the MCAT. However, the MCAT definitely will call on you to demonstrate that you understand the basic concepts of acid-base equilibrium. Buffers & indicators are MCAT favorites, as well as titration curves.


Learning Goals for Acids & Bases


Clearly distinguish the systems for defining acids and bases including Arrhenius, Brønsted-Lowry, and Lewis.
Understand the meaning of conjugate acids and bases in the Brønsted-Lowry system.
Be able to place the Brønsted-Lowry system in the aqueous context in which the equilibrium of a conjugate acid and base is coupled with the autoprotolysis of water.
Become fluent in working with pH to describe the position of acid-base equilibrium in an aqueous solution.
Understand how to employ the the acid constant ka to determine the strength of an acid or its conjugate base, and become fluent in the basic techniques for solving acid-base equilibrium problems.
Develop a concrete, intuitive understanding of how a buffered solution works to modulate pH.
Know how to work with the Henderson-Hasselbalch equation backwards and forwards.
Be able to explain the behavior of an indicator.
Be able to interpret the titration curve of a weak acid with a strong base and the titration curve of a weak base with a strong acid. Be able to pick out the half-equivalence point and the equivalence point.
Extend your understanding to other titration curves, such as the titration of a polyprotic acid.
Become familiar with the titration curves of various amino acids.

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Suggested Assignments

Carefully study the Acids & Bases section of your Main Sequence Book.
Take a review tour of the Acids & Bases resources in the Exploration Environment.
Skim through the Acids & Bases chapter of a good college chemistry textbook.
Perform a short set of MCAT style multiple-choice questions in Acids & Bases from your Main Sequence Book.

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The acid-base behavior of various organic substances is an important theme. In many cases, the acidity or basicity of a certain species is an important factor in its reactivity. The slight acidity of primary alkynes, for example, enables their employment as nucleophiles in certain reactions of importance in organic synthesis. Furthermore, the acidity or basicity or certain functional groups, especially the acidity of the carboxyl group and the basicity of the amine group, are crucially important in biochemistry.



Organic Acids and Bases on the MCAT

The MCAT likes to use the specific detailed knowledge in this area as a good index of overall student mastery of organic chemistry, so in addition to the basics, the MCAT may ask if you know about the special acidity of phenol or if you understand the behavior of the acidic alpha proton in keto-enol tautomerism. Questions regarding substituent effects on acidity or basicity are fairly common as well. From a test-writer's perspective, for a student to be able to judge the effect of a near substituent on acidity or basicity is a good index of their overall conceptual understanding of organic chemistry.

Learning Goals for Organic Acids and Bases


Be able to name the organic acids and compare their relative acidities.
Understand the basicity of amines.
Place acidity and basicity in the context of organic reaction chemistry. Become familiar with the reactions in which it is an important factor.
Be prepared to predict the effect on acidity or basicity of an electron withdrawing or electron donating substituent placed near to an acidic or basic organic functional group.

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Suggested Assignments


This is a topic which will not likely be singled out as a specific section in your Main Sequence Book. Skim through your organic chemistry textbook and single out instances of discussion of the topic.
Take a review tour of the Organic Acids and Bases resources in the Exploration Environment.

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Module 8 - Overview Cycles        { 3 - 5 hours }

Preparing to walk into the exam in command of extensive factual knowledge of Biology is one of your most important challenges. Although the technical prerequisite for the MCAT is only 1st year Biology, in truth, you really need to be a step past that level to earn a superior score on the biological sciences section of the MCAT. Although the technical ground floor prerequisite is supposed to be the year of general Biology only, it would have to be an extremely demanding Bio 101 to prepare a student to earn an 11 or higher on the MCAT Biological Sciences Section. From the macromolecular level of Biochemistry to the organ system level of Physiology, at each level of organization, the MCAT writers push the envelope of general Biology just a bit into the specialized course material. If this were not the case, their exam would be unable to differentiate the superior ranks of premedical students, for whom Biology is the most common undergraduate major. This is who you are competing with.

At this stage in the course, you must start hitting the Biology hard. Comb through the facts. Walk around with notes all the time. Play retention games. Go through the material over and over until you are completely comfortable with the facts. Overview Cycles. Look at all the pictures in your textbook. Make a set of flash cards. Skim your Main Sequence book multiple times. Overview Cycles will not only help you make the interconnections necessary for conceptual understanding. Overview Cycles help your retention by encouraging integration, interrelationship and recall. Overview Cycles will make the knowledge smaller.

In this module, we have our first Overview Cycles for Biology. You will make it all the way through the conceptual discussions of Biology in your Overview Cycle Book this module. As before with these things, when the word is 'get through them', that means to read a section at a comfortable pace. Assess its organization. Glance over it again. Think about the where the topic fits in the overall structure of Biology. Finally, go through a mental checklist of the main facts. Then move on! By the end of this course, you will know your Overview Cycle book backwards and forwards. Learn what the pages look like. Don't put a ton of pressure on yourself in this Overview Cycle and get bogged down. Get through it. Show it to your brain.

Overview Cycle - Learning Goals



Gain a good sense of the outlines of Biology at the main topic level.
Be able to clearly picture the phenomena described within each main topic of Biology and describe at least one or two main concepts from each topic.

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Suggested Assignments


Read the conceptual discussions for Biology in your Overview Cycle Book from beginning to end. Set your pace to take no more than 3 hours.
Practice with the outline of Biology below. Aim to be able to reproduce it in full if given a blank sheet of paper. Learning to outline the material is crucial to developing a stuctured knowledge base.

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BIOMOLECULES
Proteins
Carbohydrates
Nucleic Acids
Lipids
THE CELL
Biological Membranes
The Prokaryotic Cell
The Eukaryotic Cell
BIOENERGETICS AND BIOSYNTHESIS
Bioenergetics and Cellular Respiration
Photosynthesis  not on MCAT
Biosynthesis of Macromolecules
Integration of Metabolism
GENETICS & REPRODUCTION
Gene Expression
Cellular Reproduction
Mendelian Genetics
Recombination and Mutation
The Molecular Biology Laboratory
Human Genetics
DIVERSITY OF LIFE
Viruses
Monera
Protista
Fungi
Plants  not on MCAT
Animals
Animal Development and Embryology
Mammalian Tissues and Histology
HUMAN PHYSIOLOGY
The Nervous System
Sensory Systems
The Endocrine System
The Musculoskeletal System
The Cardiovascular System
Blood
The Respiratory System
The Lymphatic System and Immunity
The Urinary System
The Digestive System and Nutrition
The Reproductive System
EVOLUTION AND ECOLOGY
Populations
Evolution
Ecology




Module 8 - Interdisciplinary Discussions        { 2 hours }

Many of the Interdisciplinary Discussions in this module are devoted to understanding the concepts of Solutions and Acids & Bases in the light of more fundamental principles of Physics and Chemistry. As with our earlier discussion of the States of Matter, we take the current field of discussion as a 'field of play' for the more fundamental principles of mechanics, electrodynamics, and thermodynamics. When you can see everyday concepts of Solutions & Acids and Bases such as boiling point elevation, common ion effect, or comparative acidities in the light of the more fundamental principles, it grounds the understanding in a way that makes the knowledge much richer and more intuitive.

In addition to looking to earlier, more fundamental concepts this week, we will also be looking ahead to the relevance of solutions and acids & bases in biology.

Interdisciplinary Discussion - Learning Goals


Be prepared to describe the chemical thermodynamics of the solution process in terms of fundamental principles. Understand why 'like dissolves like' in these terms.
Be able to explain boiling point elevation and freezing point depression in terms of changes in the relative free energy of a liquid which has a substance dissolved within it.
Account for the relative acidity within various groups of similar acids such as oxygen acids, the hydrogen halides, and carboxylic acids.
Be able to list some specific examples of acid/base phenemona in life science at the biochemical level as well as the physiological level.

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Suggested Assignments

Read the Interdisciplinary Discussions associated with the Main Sequence topics of Water, Solutions, Acids & Bases, and Organic Acids and Bases. Start HERE and proceed by clicking 'Next Discussion'.
For this module's concept mapping, create one sheet relating Electricity, Intermolecular Forces, Thermochemistry, Chemical Thermodynamics and the Equilibrium State, and Solutions. Create a second sheet relating Acids & Bases and Proteins

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Module 8 - Testing        { 3 hours }

As we move into next phase of the learning program, testing becomes an increasingly important feature. Although by far your most important form of assessment will be practice MCATs using actual AAMC materials, there will also be other types of testing practice which we will include under this heading.

Although will soon be knee-deep in Organic Chemistry and Biology in the Main Sequence, we should not neglect to consolidate the gains we have made in Physics and General Chemistry. Our Interdisciplinary Discussions will help us stay on top of the physical sciences somewhat, but this is not enough. One useful tool to help your Physics mastery become finely tuned in the latter half of the course are the four online diagnostic tests available in the Testing Center of this site. These are intense, physics exams providing comprehensive score reporting and complete explanations. In this module you will take the one covering the first semester material, i.e. Mechanics, Waves, Gravity and Thermodynamics, and make sure you understand the explanations.

Testing and Self-Assessment Assignments


Go to the Testing Center and take the First Semester Diagnostic Exam 1. The exam will take you approximately 90 minutes. You can stop, log out, and finish later if you choose. The system keeps track of where you were. After the test, view your Diagnostic Score Report and study the explanations to the questions.

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Module 8 - Verbal Reasoning        { 2 - 3 hours }

For this module in Verbal Reasoning we will continue with our program of reading and exercises.

Verbal Reasoning Assignments


Two or three times this module, sit down for one half hour and read from the following works in the category of HISTORY OF SCIENCE. Practice sustaining your focus for active listening. Imagine the author. Try to hear the voice in the writing. You are working to develop stronger abilities for mindful reading.

accessibleThe American Goliah - Anonymous
moderatePhysics and Politics - Walter Bagehot
difficultA Mechanical Theory of Storms - T. Bassnett 
Write a 'correct' and an 'incorrect' answer corresponding to questions following a typical verbal reasoning passage. Pretend you are part of a committee making the test, and your job is to write a 'best answer' and a 'second best' (tricky but wrong) answer. Print and complete this exercise. Click Here.

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Module 8 - Essay        { 2 hours }

At this stage in the course, you have written six MCAT essays. In module 2 we discussed how to structure a unified critical MCAT essay. If you would like to review the advice from that module, here is a LINK to that discussion for a quick review.

Essay Assignments


Arrange an undisturbed half hour for yourself to write an essay. You need some plain ruled paper and an erasable pen. Skip lines to give yourself some flexibility for editing as you write. Click Here and the computer will present a PDF file containing your essay topic for module three. Don't advance to page 2 until you are ready to begin writing. If you would like to print out the PDF in order to write your essay away from the computer, be sure not to look at page 2 until you are ready to begin.
After you have written your essay, type it out and post your essay at the FORUM for feedback from your fellow students. If you post an essay for feedback, be sure to give your opinion and advice on at least two essays posted by others.

Activate the syllabus for task and goal management      




MECHANICS AND WAVES
link to syllabus
Kinematics1
Newton's Laws
Work, Energy, and Power
Momentum and Impulse
Rotation2
Harmonic Motion
Elastic Properties of Solids
Fluid Mechanics
Waves
FUNDAMENTAL FORCES
Gravitation3
Electricity
THE STRUCTURE OF MATTER
Atomic Theory4
Periodic Properties
The Chemical Bond
Intermolecular Forces
Functional Groups in Organic Chemistry5
Conformations of Organic Molecules
Stereochemistry
THERMODYNAMICS AND KINETICS IN PHYSICAL AND CHEMICAL SYSTEMS
Temperature and Heat Flow6
The Ideal Gas and Kinetic Theory
The First Law of Thermodynamics
Stoichiometry
Thermochemistry
The Second Law of Thermodynamics and Heat Engines7
Chemical Thermodynamics and the Equilibrium State
The States of Matter
The Physical Properties of Organic Compounds
Chemical Kinetics
SOLUTIONS AND AQUEOUS SYSTEMS
Water8
Solutions
Acids and Bases
* * *Organic Acids and Bases
ORGANIC REACTION CHEMISTRY
Nucleophiles and Electrophiles9
Intramolecular Cationic Rearrangements
Reactions with Radical Intermediates
Conjugated π Systems and Aromaticity
Reactions of Alkanes
Reactions of Alkenes
Reactions of Alkynes
Reactions of Alkyl Halides
Reactions of Allylic and Benzylic Conjugation
Reactions of Aromatic Compounds
Reactions of Alcohols and Ethers
Reactions of Aldehydes and Ketones
Reactions of Carboxylic Acids and Derivatives
Reactions of Amines
Reactions of Organic Phosphorus Compounds
Reactions of Organic Sulfur Compounds
BIOMOLECULES10 break
Proteins11
Carbohydrates
Nucleic Acids
Lipids
THE CELL
Biological Membranes
The Prokaryotic Cell
The Eukaryotic Cell
BIOENERGETICS AND BIOSYNTHESIS
Coordination Chemistry12
Oxidation/Reduction
Oxidation/Reduction in Organic Chemistry
Electrochemistry
Bioenergetics and Cellular Respiration
Photosynthesis  
Biosynthesis of Macromolecules
Integration of Metabolism
GENETICS & REPRODUCTION
Gene Expression13
Cellular Reproduction
Mendelian Genetics
Recombination and Mutation
The Molecular Biology Laboratory
Human Genetics
DIVERSITY OF LIFE
Viruses14
Monera
Protista
Fungi
Plants  
Animals
Animal Development and Embryology
Mammalian Tissues and Histology15
HUMAN PHYSIOLOGY
The Nervous System
Sensory Systems
The Endocrine System
The Musculoskeletal System
The Cardiovascular System
Blood
The Respiratory System
The Lymphatic System and Immunity
The Urinary System
The Digestive System and Nutrition
The Reproductive System
POPULATION BIOLOGY
Populations16
Evolution
Ecology
ELECTROMAGNETISM, LIGHT, AND MODERN PHYSICS
Electricity17
DC Current
Magnetism
Electomagnetic Induction
AC Current
The Properties of Light
Geometric Optics
Wave Optics
Modern Physics18
Molecular Spectroscopy
Nuclear Physics
19 break
20 break

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